Collide-seq
We reprogrammed fibroblasts through combinatorial over expression of transcription factors and used single-cell RNA-sequencing as a read-out of the resulting phenotype. We used this transcriptomic snapshot to understand how cell fates are resolved if conflicting lineages, represented as transcription factors, “collide“.
Bob A. Hersbach, , David S. Fischer, et al. Probing cell identity hierarchies by fate titration and collision during direct reprogramming. Molecular Systems Biology 18:e11129 (2022).